Publications

  • Li Z, Vuong JK, Zhang M, Stork S, Zheng S.
  • Inhibition of nonsense-mediated RNA decay by ER stress.
    RNA (in press).

  • Vuong JK, Lin CH, Zhang M, Chen L, Black DL, Zheng S.
  • PTBP1 and PTBP2 serve both specific and redundant functions in neuronal pre-mRNA splicing.
    Cell Reports 2016 Dec 6;17(10):2766-2775.

  • Zheng S.
  • IRAS: High-Throughput Identification of Novel Alternative Splicing Regulators.
    Methods in Enzymology 2016;572:269-89.

  • Vuong CK, Black DL, Zheng S.
  • The neurogenetics of alternative splicing.
    Nature Reviews Neuroscience 2016 Apr 20;17(5):265-81.

  • Zheng S.
  • Alternative splicing and nonsense-mediated mRNA decay enforce neural specific gene expression.
    International Journal of Developmental Neuroscience 2016 Mar 8. pii: S0736-5748(16)30005-3.

  • Stork C, Zheng S.
  • Genome-wide profiling of RNA-protein interactions using CLIP-Seq.
    Methods in Molecular Biology 2016;1421:137-51.

  • Li Q, Zheng S, Han A, Lin C, Stoilov P, Fu XD, Black DL.
  • The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation.
    eLife 2014 Jan 21; 3(0): e01201 (PMC3896118).

  • Zheng S, Black DL.
  • Alternative pre-mRNA splicing in neurons: growing up and extending its reach.
    Trends Genet 2013 Aug;29(8):442-8.

  • Zheng S, Damoiseaux R, Chen L, Black DL.
  • A broadly applicable high-throughput screening strategy identifies new regulators of Dlg4 (Psd-95) alternative splicing.
    Genome Research 2013 23(6): p. 998-1007.

  • Zheng S, Gray EE, Chawla G, Porse BT, O'Dell TJ, Black DL.
  • PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2.
    Nat Neurosci 2012 Jan 15;15(3):381-8 (PMC3288398).

  • Tang ZZ, Sharma S, Zheng S, Chawla G, Nikolic J, Black DL.
  • Regulation of the mutually exclusive exons 8a and 8 in the CaV1.2 calcium channel transcript by polypyrimidine tract-binding protein.
    J Biol Chem 2011 Mar 25;286(12):10007-16.

  • Zheng S, Eacker SM, Hong SJ, Gronostajski RM, Dawson TM, Dawson VL.
  • NMDA-induced neuronal survival is mediated through nuclear factor I-A in mice.
    J Clin Invest 2010 Jul;120(7):2446-56.

  • Tang ZZ, Zheng S, Nikolic J, Black DL.
  • Developmental control of CaV1.2 L-type calcium channel splicing by Fox proteins.
    Mol Cell Biol 2009 Sep;29(17):4757-65.

  • Zheng S, Chen L.
  • A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level.
    Nucleic Acids Res 2009 Jun;37(10):e75.

  • Chen L, Zheng S.
  • Studying alternative splicing regulatory networks through partial correlation analysis.
    Genome Biol 2009;10(1):R3.

  • Chen L, Zheng S.
  • Identify alternative splicing events based on position-specific evolutionary conservation.
    PLoS One 2008 Jul 30;3(7):e2806.